Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EEX36141.1Exopolygalacturonate lyase. (545 aa)    
Predicted Functional Partners:
EEX36144.1
Oligogalacturonate lyase.
     
 0.898
EEX36134.1
Exopolygalacturonate lyase.
     
 0.872
EEX36142.1
Putative efflux protein.
       0.837
EEX36140.1
Periplasmic pectic oligomers binding protein.
       0.613
EEX36138.1
Inner membrane protein.
       0.489
EEX36136.1
Putative ABC sugar transporter (permease).
       0.476
EEX36139.1
Putative sugar ABC transporter; Belongs to the ABC transporter superfamily.
       0.441
EEX36132.1
Pectinesterase.
    
  0.404
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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