Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
EEX36144.1Oligogalacturonate lyase. (387 aa)    
Predicted Functional Partners:
EEX36134.1
Exopolygalacturonate lyase.
 
  
 0.963
EEX36125.1
Hypothetical protein.
 
  
 0.901
EEX36141.1
Exopolygalacturonate lyase.
     
 0.898
EEX36461.1
Outer membrane protein A precursor; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
 
 0.822
EEX36868.1
TolA protein.
 
   0.725
EEX37817.1
Glutamate synthase [NADPH] large chain.
     
  0.717
EEX36143.1
Sodium-solute symporter putative; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.708
EEX37114.1
Hypothetical protein.
 
 0.673
EEX36138.1
Inner membrane protein.
 
     0.636
EEX38033.1
Hypothetical protein.
 
     0.634
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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