STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEX36144.1Oligogalacturonate lyase. (387 aa)    
Predicted Functional Partners:
EEX36461.1
Outer membrane protein A precursor; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
 
 0.924
EEX36134.1
Exopolygalacturonate lyase.
 
  
 0.875
EEX37114.1
Hypothetical protein.
 
 0.767
EEX36868.1
TolA protein.
 
 
 0.708
cpoB
TPR repeat-containing protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
  
  
 0.695
EEX37594.1
Outer membrane porin protein.
  
 
 
 0.664
EEX36138.1
Inner membrane protein.
 
     0.636
EEX36141.1
Exopolygalacturonate lyase.
     
 0.636
EEX38033.1
Hypothetical protein.
 
     0.634
EEX38317.1
Outer membrane protein OmpU.
  
 
 
 0.627
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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