Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EEX36197.1Hypothetical protein. (318 aa)    
Predicted Functional Partners:
EEX36195.1
Deoxyribodipyrimidine photolyase; Belongs to the DNA photolyase family.
  
  
 0.955
EEX36196.1
Transcriptional regulator MerR family.
  
  
 0.935
EEX36194.1
Hypothetical protein.
       0.842
EEX37087.1
Deoxyribodipyrimidine photolyase single-strand-specific; Belongs to the DNA photolyase family.
  
  
 0.812
EEX37337.1
Deoxyribodipyrimidine photolyase/cryptochrome family protein.
  
  
 0.812
thiI
Thiamine biosynthesis protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS.
 
   
 0.679
EEX36958.1
Putative transcriptional regulator.
 
  
 0.586
EEX36962.1
Cyclopropane-fatty-acyl-phospholipid synthase.
     
 0.530
EEX36959.1
Oxidoreductase short-chain dehydrogenase/reductase family.
       0.486
EEX36960.1
Amine oxidase flavin-containing.
       0.486
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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