Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EEX36308.1TPR domain protein in aerotolerance operon. (616 aa)    
Predicted Functional Partners:
EEX36307.1
BatD.
 
 
 0.980
EEX36309.1
Protein BatA; Bacteroides aerotolerance operon.
   
 0.966
EEX36310.1
Hypothetical protein.
 
  
 0.931
EEX36311.1
MoxR-like ATPase in aerotolerance operon.
 
     0.868
EEX37815.1
Aerobic respiration control sensor protein ArcB.
   
 0.840
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
   
  0.803
rpoA
DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.791
htpG
Chaperone protein HtpG; Molecular chaperone. Has ATPase activity.
  
 0.757
EEX36172.1
Hybrid sensory histidine kinase in two-component regulatory system with EvgA.
   
 0.745
EEX38325.1
Chitin catabolic cascade sensor histidine kinase ChiS.
    
 0.744
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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