Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEX36381.1GGDEF family protein. (625 aa)    
Predicted Functional Partners:
EEX37998.1
MSHA biogenesis protein MshH.
 
 0.920
EEX36021.1
Predicted signal transduction protein.
 
0.916
EEX37815.1
Aerobic respiration control sensor protein ArcB.
  
 0.900
EEX36306.1
GGDEF family protein.
 
  0.843
EEX38405.1
BarA sensory histidine kinase.
 
 0.811
EEX36172.1
Hybrid sensory histidine kinase in two-component regulatory system with EvgA.
  
 0.805
EEX38607.1
Sensory box/GGDEF family protein.
 
0.789
EEX36951.1
Hypothetical protein.
 
0.778
EEX37310.1
GGDEF family protein.
 
0.775
EEX37925.1
Sensory box/GGDEF family protein.
 
0.749
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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