Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEX36403.1GGDEF family protein. (338 aa)    
Predicted Functional Partners:
EEX36951.1
Hypothetical protein.
 
 0.896
EEX36021.1
Predicted signal transduction protein.
 
 0.894
EEX38607.1
Sensory box/GGDEF family protein.
 
 0.892
EEX37544.1
EAL domain protein.
 
  0.871
EEX37815.1
Aerobic respiration control sensor protein ArcB.
 
 0.869
EEX37310.1
GGDEF family protein.
 
  0.850
EEX38295.1
C-di-GMP phosphodiesterase A-related protein.
 
0.847
EEX36183.1
Response regulator receiver modulated diguanylate phosphodiesterase.
 
 0.847
EEX36404.1
Chemotaxis protein CheV.
  
 
  0.842
EEX36746.1
Metal-dependent phosphohydrolase.
 
 0.823
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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