STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEX36502.1Pentapeptide repeat protein. (199 aa)    
Predicted Functional Partners:
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
     
  0.636
EEX38295.1
C-di-GMP phosphodiesterase A-related protein.
    
 0.633
EEX35659.1
Signal transduction histidine kinase.
    
 0.617
EEX36587.1
Membrane-bound lytic murein transglycosylase D precursor.
 
 
 
 0.485
EEX36501.1
Hypothetical protein.
       0.477
EEX35601.1
N-acetylmuramoyl-L-alanine amidase AmiB precursor.
   
 
 0.446
EEX36503.1
Stability protein StbD; Antitoxin component of a type II toxin-antitoxin (TA) system.
       0.440
EEX36504.1
Cytotoxic translational repressor of toxin-antitoxin stability system; COG2026.
       0.440
EEX37466.1
Permease of the drug/metabolite transporter (DMT) superfamily.
 
 
   0.435
EEX37314.1
Hypothetical protein.
  
  
  0.425
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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