Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Gene Fusion
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Co-expression
Experiments
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[Homology]
Score
EEX35720.1Lysine/cadaverine antiporter membrane protein CadB. (446 aa)    
Predicted Functional Partners:
EEX35719.1
Lysine decarboxylase.
 
  
 0.776
EEX36409.1
Periplasmic alpha-amylase.
  
 
 0.668
EEX36315.1
Glycosidase.
  
 
 0.652
EEX36045.1
Anaerobic C4-dicarboxylate transporter DcuC.
  
     0.631
kdkA
3-deoxy-D-manno-octulosonic acid kinase; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family.
    
 0.626
EEX38449.1
Alpha-amylase precursor.
    
 0.600
EEX38457.1
Alpha-glucosidase.
    
 0.600
EEX37623.1
Trehalose-6-phosphate hydrolase.
    
 0.600
EEX38259.1
Chorismate mutase I/prephenate dehydratase.
   
 0.582
EEX37817.1
Glutamate synthase [NADPH] large chain.
  
  
 0.577
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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