STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEX35779.1Hypothetical WbfB-like protein. (718 aa)    
Predicted Functional Partners:
EEX35777.1
Hypothetical protein.
 
  
 0.959
EEX35778.1
Polysaccharide synthesis-related protein.
 
  
 0.952
rpoZ
DNA-directed RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.750
rplF
LSU ribosomal protein L6p (L9e); This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.728
EEX37150.1
Sterol desaturase.
    
 0.704
EEX37268.1
Diaminobutyrate-pyruvate transaminase/L-2,4-diaminobutyrate decarboxylase.
    
 0.685
EEX36774.1
long-chain-fatty-acid--CoA ligase.
    
 0.660
EEX37435.1
long-chain-fatty-acid--CoA ligase.
    
 0.660
EEX37453.1
O-succinylbenzoic acid--CoA ligase.
    
 0.660
EEX36940.1
Glutamate decarboxylase eukaryotic type.
    
 0.651
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.