STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EEX35665.1LysM domain-containing protein. (371 aa)    
Predicted Functional Partners:
EEX38137.1
Type IV pilus biogenesis protein PilQ.
 
 
 
 0.961
EEX38134.1
Hypothetical protein.
  
 
   0.904
smg
Hypothetical protein; Belongs to the Smg family.
 
     0.838
guaA
GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP.
    
  0.806
EEX35664.1
Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake.
       0.792
EEX38136.1
Type IV pilus biogenesis protein PilP.
 
     0.754
EEX37997.1
MSHA biogenesis protein MshI.
  
 
   0.751
def-2
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
       0.729
EEX35601.1
N-acetylmuramoyl-L-alanine amidase AmiB precursor.
 
 
 0.667
EEX36587.1
Membrane-bound lytic murein transglycosylase D precursor.
 
  
 0.652
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.