STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEX35665.1LysM domain-containing protein. (371 aa)    
Predicted Functional Partners:
EEX38137.1
Type IV pilus biogenesis protein PilQ.
 
 
 
 0.972
EEX38136.1
Type IV pilus biogenesis protein PilP.
 
 
   0.946
EEX38134.1
Hypothetical protein.
  
 
   0.935
EEX37997.1
MSHA biogenesis protein MshI.
  
 
   0.832
guaA
GMP synthase [glutamine-hydrolyzing]; Catalyzes the synthesis of GMP from XMP.
    
  0.795
smg
Hypothetical protein; Belongs to the Smg family.
 
     0.770
EEX35601.1
N-acetylmuramoyl-L-alanine amidase AmiB precursor.
 
 
 0.761
EEX35664.1
Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake.
       0.704
EEX36587.1
Membrane-bound lytic murein transglycosylase D precursor.
 
  
 0.697
EEX38381.1
Type 4 fimbrial assembly protein PilC.
  
 
   0.667
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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