STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slyXProtein SlyX; Belongs to the SlyX family. (77 aa)    
Predicted Functional Partners:
EEX35593.1
Hypothetical protein.
       0.800
EEX38228.1
LptA protein; Essential for LPS transport across the periplasm.
  
     0.652
EEX36713.1
Histidine triad family protein.
 
    0.568
EEX37865.1
ABC-type uncharacterized transport system permease component.
  
   
 0.568
EEX35592.1
FKBP-type peptidyl-prolyl cis-trans isomerase FkpA precursor.
     
 0.564
EEX38430.1
Hypothetical protein; Belongs to the UPF0149 family.
  
     0.528
EEX37384.1
Hypothetical protein.
  
     0.467
EEX36373.1
Hypothetical protein.
  
    0.465
lptE
LPS-assembly lipoprotein RlpB precursor; Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane.
  
     0.460
Your Current Organism:
Vibrio metschnikovii
NCBI taxonomy Id: 675813
Other names: V. metschnikovii CIP 69.14, Vibrio metschnikovii CIP 69.14, Vibrio metschnikovii str. CIP 69.14, Vibrio metschnikovii strain CIP 69.14
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.