Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EEX35595.1 | EEX35596.1 | VIB_003074 | VIB_003075 | HflC protein; HflC and HflK could regulate a protease. | HflK protein; HflC and HflK could encode or regulate a protease. | 0.998 |
| EEX35595.1 | EEX35814.1 | VIB_003074 | VIB_002963 | HflC protein; HflC and HflK could regulate a protease. | Peptidase M16 domain protein. | 0.544 |
| EEX35595.1 | EEX37870.1 | VIB_003074 | VIB_001998 | HflC protein; HflC and HflK could regulate a protease. | Protease insulinase family/protease insulinase family. | 0.544 |
| EEX35595.1 | ftsH | VIB_003074 | VIB_000258 | HflC protein; HflC and HflK could regulate a protease. | Cell division protein FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. | 0.971 |
| EEX35595.1 | hflX | VIB_003074 | VIB_003076 | HflC protein; HflC and HflK could regulate a protease. | GTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | 0.850 |
| EEX35595.1 | hfq | VIB_003074 | VIB_003077 | HflC protein; HflC and HflK could regulate a protease. | RNA-binding protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.625 |
| EEX35595.1 | miaA | VIB_003074 | VIB_003078 | HflC protein; HflC and HflK could regulate a protease. | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.552 |
| EEX35595.1 | yidC | VIB_003074 | VIB_003025 | HflC protein; HflC and HflK could regulate a protease. | OxaI/YidC membrane insertion protein; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins. | 0.567 |
| EEX35596.1 | EEX35595.1 | VIB_003075 | VIB_003074 | HflK protein; HflC and HflK could encode or regulate a protease. | HflC protein; HflC and HflK could regulate a protease. | 0.998 |
| EEX35596.1 | EEX35814.1 | VIB_003075 | VIB_002963 | HflK protein; HflC and HflK could encode or regulate a protease. | Peptidase M16 domain protein. | 0.544 |
| EEX35596.1 | EEX37870.1 | VIB_003075 | VIB_001998 | HflK protein; HflC and HflK could encode or regulate a protease. | Protease insulinase family/protease insulinase family. | 0.544 |
| EEX35596.1 | ftsH | VIB_003075 | VIB_000258 | HflK protein; HflC and HflK could encode or regulate a protease. | Cell division protein FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. | 0.982 |
| EEX35596.1 | hflX | VIB_003075 | VIB_003076 | HflK protein; HflC and HflK could encode or regulate a protease. | GTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | 0.922 |
| EEX35596.1 | hfq | VIB_003075 | VIB_003077 | HflK protein; HflC and HflK could encode or regulate a protease. | RNA-binding protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.628 |
| EEX35596.1 | ileS | VIB_003075 | VIB_000221 | HflK protein; HflC and HflK could encode or regulate a protease. | isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily. | 0.477 |
| EEX35596.1 | miaA | VIB_003075 | VIB_003078 | HflK protein; HflC and HflK could encode or regulate a protease. | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.664 |
| EEX35596.1 | tig | VIB_003075 | VIB_001662 | HflK protein; HflC and HflK could encode or regulate a protease. | Cell division trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily. | 0.500 |
| EEX35596.1 | yidC | VIB_003075 | VIB_003025 | HflK protein; HflC and HflK could encode or regulate a protease. | OxaI/YidC membrane insertion protein; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins. | 0.677 |
| EEX35814.1 | EEX35595.1 | VIB_002963 | VIB_003074 | Peptidase M16 domain protein. | HflC protein; HflC and HflK could regulate a protease. | 0.544 |
| EEX35814.1 | EEX35596.1 | VIB_002963 | VIB_003075 | Peptidase M16 domain protein. | HflK protein; HflC and HflK could encode or regulate a protease. | 0.544 |
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