Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EEX35603.1 | EEX37113.1 | VIB_003082 | VIB_001227 | Oligoribonuclease. | ATP-dependent helicase HrpA. | 0.500 |
| EEX35603.1 | EEX37250.1 | VIB_003082 | VIB_001368 | Oligoribonuclease. | DNA polymerase III epsilon subunit. | 0.417 |
| EEX35603.1 | EEX37852.1 | VIB_003082 | VIB_001980 | Oligoribonuclease. | Stringent starvation protein A. | 0.528 |
| EEX35603.1 | cca | VIB_003082 | VIB_000345 | Oligoribonuclease. | tRNA nucleotidyltransferase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'-nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases. | 0.525 |
| EEX35603.1 | dnaQ | VIB_003082 | VIB_000692 | Oligoribonuclease. | DNA polymerase III epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease. | 0.608 |
| EEX35603.1 | psd | VIB_003082 | VIB_003084 | Oligoribonuclease. | Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). | 0.554 |
| EEX35603.1 | rnc | VIB_003082 | VIB_000361 | Oligoribonuclease. | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.523 |
| EEX35603.1 | rnt | VIB_003082 | VIB_001692 | Oligoribonuclease. | Ribonuclease T; Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis. | 0.573 |
| EEX35603.1 | rpmF | VIB_003082 | VIB_001618 | Oligoribonuclease. | LSU ribosomal protein L32p; Belongs to the bacterial ribosomal protein bL32 family. | 0.438 |
| EEX35603.1 | rsgA | VIB_003082 | VIB_003083 | Oligoribonuclease. | Ribosome small subunit-stimulated GTPase EngC; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | 0.512 |
| EEX37113.1 | EEX35603.1 | VIB_001227 | VIB_003082 | ATP-dependent helicase HrpA. | Oligoribonuclease. | 0.500 |
| EEX37113.1 | dnaQ | VIB_001227 | VIB_000692 | ATP-dependent helicase HrpA. | DNA polymerase III epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease. | 0.405 |
| EEX37113.1 | rnc | VIB_001227 | VIB_000361 | ATP-dependent helicase HrpA. | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.525 |
| EEX37250.1 | EEX35603.1 | VIB_001368 | VIB_003082 | DNA polymerase III epsilon subunit. | Oligoribonuclease. | 0.417 |
| EEX37250.1 | dnaQ | VIB_001368 | VIB_000692 | DNA polymerase III epsilon subunit. | DNA polymerase III epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease. | 0.655 |
| EEX37852.1 | EEX35603.1 | VIB_001980 | VIB_003082 | Stringent starvation protein A. | Oligoribonuclease. | 0.528 |
| cca | EEX35603.1 | VIB_000345 | VIB_003082 | tRNA nucleotidyltransferase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'-nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases. | Oligoribonuclease. | 0.525 |
| cca | rnc | VIB_000345 | VIB_000361 | tRNA nucleotidyltransferase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'-nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases. | Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. | 0.428 |
| cca | rpmF | VIB_000345 | VIB_001618 | tRNA nucleotidyltransferase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'-nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases. | LSU ribosomal protein L32p; Belongs to the bacterial ribosomal protein bL32 family. | 0.610 |
| dnaQ | EEX35603.1 | VIB_000692 | VIB_003082 | DNA polymerase III epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease. | Oligoribonuclease. | 0.608 |
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