Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EEX91732.1 | EEX95086.1 | VIA_002374 | VIA_000549 | AAA ATPase. | 3-deoxy-D-manno-octulosonic-acid transferase. | 0.613 |
EEX92152.1 | EEX94092.1 | VIA_002796 | VIA_001250 | Hypothetical protein. | Putative membrane protein. | 0.443 |
EEX92152.1 | EEX95086.1 | VIA_002796 | VIA_000549 | Hypothetical protein. | 3-deoxy-D-manno-octulosonic-acid transferase. | 0.711 |
EEX94092.1 | EEX92152.1 | VIA_001250 | VIA_002796 | Putative membrane protein. | Hypothetical protein. | 0.443 |
EEX94092.1 | EEX95086.1 | VIA_001250 | VIA_000549 | Putative membrane protein. | 3-deoxy-D-manno-octulosonic-acid transferase. | 0.552 |
EEX94674.1 | EEX95086.1 | VIA_001834 | VIA_000549 | Hypothetical protein. | 3-deoxy-D-manno-octulosonic-acid transferase. | 0.434 |
EEX95083.1 | EEX95084.1 | VIA_000546 | VIA_000547 | ADP-heptose--lipooligosaccharide heptosyltransferase II. | Putative lipopolysaccharide A protein. | 0.821 |
EEX95083.1 | EEX95085.1 | VIA_000546 | VIA_000548 | ADP-heptose--lipooligosaccharide heptosyltransferase II. | O-antigen ligase. | 0.864 |
EEX95083.1 | EEX95086.1 | VIA_000546 | VIA_000549 | ADP-heptose--lipooligosaccharide heptosyltransferase II. | 3-deoxy-D-manno-octulosonic-acid transferase. | 0.459 |
EEX95083.1 | kdkA | VIA_000546 | VIA_000542 | ADP-heptose--lipooligosaccharide heptosyltransferase II. | 3-deoxy-D-manno-octulosonic acid kinase; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family. | 0.877 |
EEX95084.1 | EEX95083.1 | VIA_000547 | VIA_000546 | Putative lipopolysaccharide A protein. | ADP-heptose--lipooligosaccharide heptosyltransferase II. | 0.821 |
EEX95084.1 | EEX95085.1 | VIA_000547 | VIA_000548 | Putative lipopolysaccharide A protein. | O-antigen ligase. | 0.533 |
EEX95084.1 | EEX95086.1 | VIA_000547 | VIA_000549 | Putative lipopolysaccharide A protein. | 3-deoxy-D-manno-octulosonic-acid transferase. | 0.431 |
EEX95085.1 | EEX95083.1 | VIA_000548 | VIA_000546 | O-antigen ligase. | ADP-heptose--lipooligosaccharide heptosyltransferase II. | 0.864 |
EEX95085.1 | EEX95084.1 | VIA_000548 | VIA_000547 | O-antigen ligase. | Putative lipopolysaccharide A protein. | 0.533 |
EEX95085.1 | EEX95086.1 | VIA_000548 | VIA_000549 | O-antigen ligase. | 3-deoxy-D-manno-octulosonic-acid transferase. | 0.790 |
EEX95085.1 | EEX95088.1 | VIA_000548 | VIA_000551 | O-antigen ligase. | Hypothetical protein. | 0.477 |
EEX95085.1 | kdkA | VIA_000548 | VIA_000542 | O-antigen ligase. | 3-deoxy-D-manno-octulosonic acid kinase; Catalyzes the ATP-dependent phosphorylation of the 3-deoxy-D- manno-octulosonic acid (Kdo) residue in Kdo-lipid IV(A) at the 4-OH position; Belongs to the protein kinase superfamily. KdkA/RfaP family. | 0.403 |
EEX95085.1 | mutM | VIA_000548 | VIA_000550 | O-antigen ligase. | formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. | 0.511 |
EEX95086.1 | EEX91732.1 | VIA_000549 | VIA_002374 | 3-deoxy-D-manno-octulosonic-acid transferase. | AAA ATPase. | 0.613 |
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