Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EEX92975.1 | EEX92976.1 | VIA_003620 | VIA_003621 | Protein SirB1. | Protein SirB2. | 0.770 |
EEX92975.1 | EEX95474.1 | VIA_003620 | VIA_000006 | Protein SirB1. | ATPase of the AAA+ class. | 0.415 |
EEX92975.1 | hemA | VIA_003620 | VIA_003624 | Protein SirB1. | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.595 |
EEX92975.1 | ipk | VIA_003620 | VIA_003626 | Protein SirB1. | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. | 0.452 |
EEX92975.1 | kdsA | VIA_003620 | VIA_003619 | Protein SirB1. | 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase; Belongs to the KdsA family. | 0.674 |
EEX92975.1 | lolB | VIA_003620 | VIA_003625 | Protein SirB1. | Outer membrane lipoprotein LolB precursor; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein. | 0.452 |
EEX92975.1 | prfA | VIA_003620 | VIA_003623 | Protein SirB1. | Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. | 0.704 |
EEX92975.1 | prmC | VIA_003620 | VIA_003622 | Protein SirB1. | Polypeptide chain release factor methylase; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily. | 0.704 |
EEX92975.1 | prs | VIA_003620 | VIA_003627 | Protein SirB1. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.418 |
EEX92975.1 | zapC | VIA_003620 | VIA_002978 | Protein SirB1. | Hypothetical protein; Contributes to the efficiency of the cell division process by stabilizing the polymeric form of the cell division protein FtsZ. Acts by promoting interactions between FtsZ protofilaments and suppressing the GTPase activity of FtsZ. | 0.434 |
EEX92976.1 | EEX92975.1 | VIA_003621 | VIA_003620 | Protein SirB2. | Protein SirB1. | 0.770 |
EEX92976.1 | hemA | VIA_003621 | VIA_003624 | Protein SirB2. | glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.658 |
EEX92976.1 | ipk | VIA_003621 | VIA_003626 | Protein SirB2. | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. | 0.489 |
EEX92976.1 | kdsA | VIA_003621 | VIA_003619 | Protein SirB2. | 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase; Belongs to the KdsA family. | 0.609 |
EEX92976.1 | lolB | VIA_003621 | VIA_003625 | Protein SirB2. | Outer membrane lipoprotein LolB precursor; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein. | 0.573 |
EEX92976.1 | prfA | VIA_003621 | VIA_003623 | Protein SirB2. | Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. | 0.797 |
EEX92976.1 | prmC | VIA_003621 | VIA_003622 | Protein SirB2. | Polypeptide chain release factor methylase; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily. | 0.896 |
EEX92976.1 | prs | VIA_003621 | VIA_003627 | Protein SirB2. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.450 |
EEX95474.1 | EEX92975.1 | VIA_000006 | VIA_003620 | ATPase of the AAA+ class. | Protein SirB1. | 0.415 |
EEX95474.1 | zapC | VIA_000006 | VIA_002978 | ATPase of the AAA+ class. | Hypothetical protein; Contributes to the efficiency of the cell division process by stabilizing the polymeric form of the cell division protein FtsZ. Acts by promoting interactions between FtsZ protofilaments and suppressing the GTPase activity of FtsZ. | 0.745 |
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