Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EEX93201.1 | EEX93332.1 | VIA_003848 | VIA_003979 | Stringent starvation protein B. | Putative membrane protein. | 0.557 |
EEX93201.1 | EEX93333.1 | VIA_003848 | VIA_003980 | Stringent starvation protein B. | Predicted permease. | 0.515 |
EEX93201.1 | lptD | VIA_003848 | VIA_000230 | Stringent starvation protein B. | Imp required for envelope biogenesis/organic solvent tolerance protein precursor; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. | 0.490 |
EEX93201.1 | lpxH | VIA_003848 | VIA_002466 | Stringent starvation protein B. | UDP-2,3-diacylglucosamine hydrolase; Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.738 |
EEX93332.1 | EEX93201.1 | VIA_003979 | VIA_003848 | Putative membrane protein. | Stringent starvation protein B. | 0.557 |
EEX93332.1 | EEX93333.1 | VIA_003979 | VIA_003980 | Putative membrane protein. | Predicted permease. | 0.999 |
EEX93332.1 | EEX93335.1 | VIA_003979 | VIA_003982 | Putative membrane protein. | DNA polymerase III chi subunit. | 0.567 |
EEX93332.1 | EEX95238.1 | VIA_003979 | VIA_000156 | Putative membrane protein. | Lipopolysaccharide ABC transporter ATP-binding protein LptB. | 0.993 |
EEX93332.1 | EEX95245.1 | VIA_003979 | VIA_000163 | Putative membrane protein. | Uncharacterized ABC transporter permease component YrbE. | 0.587 |
EEX93332.1 | lptC | VIA_003979 | VIA_000158 | Putative membrane protein. | YrbK protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. | 0.963 |
EEX93332.1 | lptD | VIA_003979 | VIA_000230 | Putative membrane protein. | Imp required for envelope biogenesis/organic solvent tolerance protein precursor; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. | 0.857 |
EEX93332.1 | lpxH | VIA_003979 | VIA_002466 | Putative membrane protein. | UDP-2,3-diacylglucosamine hydrolase; Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.541 |
EEX93332.1 | pepA | VIA_003979 | VIA_003981 | Putative membrane protein. | Cytosol aminopeptidase PepA; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides. | 0.558 |
EEX93332.1 | secD-2 | VIA_003979 | VIA_002163 | Putative membrane protein. | Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. | 0.524 |
EEX93333.1 | EEX93201.1 | VIA_003980 | VIA_003848 | Predicted permease. | Stringent starvation protein B. | 0.515 |
EEX93333.1 | EEX93332.1 | VIA_003980 | VIA_003979 | Predicted permease. | Putative membrane protein. | 0.999 |
EEX93333.1 | EEX93335.1 | VIA_003980 | VIA_003982 | Predicted permease. | DNA polymerase III chi subunit. | 0.565 |
EEX93333.1 | EEX95238.1 | VIA_003980 | VIA_000156 | Predicted permease. | Lipopolysaccharide ABC transporter ATP-binding protein LptB. | 0.992 |
EEX93333.1 | EEX95245.1 | VIA_003980 | VIA_000163 | Predicted permease. | Uncharacterized ABC transporter permease component YrbE. | 0.621 |
EEX93333.1 | lptC | VIA_003980 | VIA_000158 | Predicted permease. | YrbK protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. | 0.968 |
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