Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EEX93332.1 | EEX93333.1 | VIA_003979 | VIA_003980 | Putative membrane protein. | Predicted permease. | 0.999 |
EEX93332.1 | EEX93335.1 | VIA_003979 | VIA_003982 | Putative membrane protein. | DNA polymerase III chi subunit. | 0.567 |
EEX93332.1 | EEX95238.1 | VIA_003979 | VIA_000156 | Putative membrane protein. | Lipopolysaccharide ABC transporter ATP-binding protein LptB. | 0.993 |
EEX93332.1 | EEX95245.1 | VIA_003979 | VIA_000163 | Putative membrane protein. | Uncharacterized ABC transporter permease component YrbE. | 0.587 |
EEX93332.1 | bamA | VIA_003979 | VIA_003747 | Putative membrane protein. | Outer membrane protein assembly factor YaeT precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.489 |
EEX93332.1 | lptC | VIA_003979 | VIA_000158 | Putative membrane protein. | YrbK protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. | 0.963 |
EEX93332.1 | lptD | VIA_003979 | VIA_000230 | Putative membrane protein. | Imp required for envelope biogenesis/organic solvent tolerance protein precursor; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. | 0.857 |
EEX93332.1 | pepA | VIA_003979 | VIA_003981 | Putative membrane protein. | Cytosol aminopeptidase PepA; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides. | 0.558 |
EEX93333.1 | EEX93332.1 | VIA_003980 | VIA_003979 | Predicted permease. | Putative membrane protein. | 0.999 |
EEX93333.1 | EEX93335.1 | VIA_003980 | VIA_003982 | Predicted permease. | DNA polymerase III chi subunit. | 0.565 |
EEX93333.1 | EEX95238.1 | VIA_003980 | VIA_000156 | Predicted permease. | Lipopolysaccharide ABC transporter ATP-binding protein LptB. | 0.992 |
EEX93333.1 | EEX95245.1 | VIA_003980 | VIA_000163 | Predicted permease. | Uncharacterized ABC transporter permease component YrbE. | 0.621 |
EEX93333.1 | bamA | VIA_003980 | VIA_003747 | Predicted permease. | Outer membrane protein assembly factor YaeT precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.597 |
EEX93333.1 | lptC | VIA_003980 | VIA_000158 | Predicted permease. | YrbK protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. Facilitates the transfer of LPS from the inner membrane to the periplasmic protein LptA. Could be a docking site for LptA. | 0.968 |
EEX93333.1 | lptD | VIA_003980 | VIA_000230 | Predicted permease. | Imp required for envelope biogenesis/organic solvent tolerance protein precursor; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. | 0.904 |
EEX93333.1 | pepA | VIA_003980 | VIA_003981 | Predicted permease. | Cytosol aminopeptidase PepA; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides. | 0.558 |
EEX93333.1 | surA | VIA_003980 | VIA_000229 | Predicted permease. | Peptidyl-prolyl cis-trans isomerase SurA; Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation. | 0.605 |
EEX93333.1 | tolB | VIA_003980 | VIA_002532 | Predicted permease. | TolB protein precursor; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. | 0.533 |
EEX93335.1 | EEX93332.1 | VIA_003982 | VIA_003979 | DNA polymerase III chi subunit. | Putative membrane protein. | 0.567 |
EEX93335.1 | EEX93333.1 | VIA_003982 | VIA_003980 | DNA polymerase III chi subunit. | Predicted permease. | 0.565 |
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