STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1E3Q035RRM domain-containing protein. (632 aa)    
Predicted Functional Partners:
A0A1E3PWY0
Nuclear cap-binding protein subunit 2.
    
 0.777
A0A1E3Q3H4
RRM domain-containing protein.
    
 0.760
A0A1E3QDZ5
RRM domain-containing protein.
    
 0.740
A0A1E3Q955
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
    
 0.695
A0A1E3QFL2
Uncharacterized protein.
    
 0.694
A0A1E3Q9L1
Tr-type G domain-containing protein.
   
 0.687
A0A1E3QDL0
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 0.683
A0A1E3QAD3
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.661
A0A1E3Q388
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.659
A0A1E3QB30
RPOL4c domain-containing protein.
    
 0.659
Your Current Organism:
Lipomyces starkeyi
NCBI taxonomy Id: 675824
Other names: L. starkeyi NRRL Y-11557, Lipomyces starkeyi NRRL Y-11557
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