A0A1E3QCB4 protein (Lipomyces starkeyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1E3QCB4

PCI domain-containing protein. (502 aa)

Predicted Functional Partners:

A0A1E3PV33

0.999

A0A1E3PX03

0.999

A0A1E3PX34

0.999

A0A1E3Q392

0.999

A0A1E3Q3L4

0.999

A0A1E3QFI6

0.999

A0A1E3Q6E1

0.997

A0A1E3PZN2

0.995

A0A1E3QB35

0.994

A0A1E3PYQ1

0.992

Your Current Organism:

Lipomyces starkeyi

NCBI taxonomy Id: 675824
Other names: L. starkeyi NRRL Y-11557, Lipomyces starkeyi NRRL Y-11557

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1E3PV33	A0A1E3PX03	Proteasome endopeptidase complex; Belongs to the peptidase T1A family.	VWFA domain-containing protein.	0.998
A0A1E3PV33	A0A1E3PX34	Proteasome endopeptidase complex; Belongs to the peptidase T1A family.	PCI domain-containing protein.	0.999
A0A1E3PV33	A0A1E3PYQ1	Proteasome endopeptidase complex; Belongs to the peptidase T1A family.	Uncharacterized protein.	0.928
A0A1E3PV33	A0A1E3PZN2	Proteasome endopeptidase complex; Belongs to the peptidase T1A family.	Uncharacterized protein.	0.975
A0A1E3PV33	A0A1E3Q392	Proteasome endopeptidase complex; Belongs to the peptidase T1A family.	PCI domain-containing protein.	0.999
A0A1E3PV33	A0A1E3Q3L4	Proteasome endopeptidase complex; Belongs to the peptidase T1A family.	26S proteasome regulatory subunit RPN1; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.999
A0A1E3PV33	A0A1E3Q6E1	Proteasome endopeptidase complex; Belongs to the peptidase T1A family.	CSN8_PSD8_EIF3K domain-containing protein.	0.997
A0A1E3PV33	A0A1E3QB35	Proteasome endopeptidase complex; Belongs to the peptidase T1A family.	Ubiquitin carboxyl-terminal hydrolase.	0.987
A0A1E3PV33	A0A1E3QCB4	Proteasome endopeptidase complex; Belongs to the peptidase T1A family.	PCI domain-containing protein.	0.999
A0A1E3PV33	A0A1E3QFI6	Proteasome endopeptidase complex; Belongs to the peptidase T1A family.	PCI domain-containing protein.	0.999
A0A1E3PX03	A0A1E3PV33	VWFA domain-containing protein.	Proteasome endopeptidase complex; Belongs to the peptidase T1A family.	0.998
A0A1E3PX03	A0A1E3PX34	VWFA domain-containing protein.	PCI domain-containing protein.	0.999
A0A1E3PX03	A0A1E3PYQ1	VWFA domain-containing protein.	Uncharacterized protein.	0.982
A0A1E3PX03	A0A1E3PZN2	VWFA domain-containing protein.	Uncharacterized protein.	0.997
A0A1E3PX03	A0A1E3Q392	VWFA domain-containing protein.	PCI domain-containing protein.	0.999
A0A1E3PX03	A0A1E3Q3L4	VWFA domain-containing protein.	26S proteasome regulatory subunit RPN1; Acts as a regulatory subunit of the 26 proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.999
A0A1E3PX03	A0A1E3Q6E1	VWFA domain-containing protein.	CSN8_PSD8_EIF3K domain-containing protein.	0.999
A0A1E3PX03	A0A1E3QB35	VWFA domain-containing protein.	Ubiquitin carboxyl-terminal hydrolase.	0.998
A0A1E3PX03	A0A1E3QCB4	VWFA domain-containing protein.	PCI domain-containing protein.	0.999
A0A1E3PX03	A0A1E3QFI6	VWFA domain-containing protein.	PCI domain-containing protein.	0.998