A0A1E3QCK1 protein (Lipomyces starkeyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1E3QCK1

Ubiquitin carboxyl-terminal hydrolase. (780 aa)

Predicted Functional Partners:

A0A1E3QD34

0.983

A0A1E3PZ45

0.967

A0A1E3QBN3

0.967

A0A1E3Q8Y0

0.910

A0A1E3PTU8

0.905

A0A1E3PW99

0.905

A0A1E3PZ58

0.905

A0A1E3QBM3

0.888

A0A1E3PWS3

0.862

A0A1E3QAJ9

0.839

Your Current Organism:

Lipomyces starkeyi

NCBI taxonomy Id: 675824
Other names: L. starkeyi NRRL Y-11557, Lipomyces starkeyi NRRL Y-11557

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1E3PTU8	A0A1E3PWS3	Uncharacterized protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.609
A0A1E3PTU8	A0A1E3PZ45	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.947
A0A1E3PTU8	A0A1E3Q8Y0	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.885
A0A1E3PTU8	A0A1E3QAJ9	Uncharacterized protein.	Uncharacterized protein.	0.911
A0A1E3PTU8	A0A1E3QBN3	Uncharacterized protein.	RRN7-type domain-containing protein.	0.949
A0A1E3PTU8	A0A1E3QCK1	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase.	0.905
A0A1E3PW99	A0A1E3PWS3	Uncharacterized protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.609
A0A1E3PW99	A0A1E3PZ45	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.947
A0A1E3PW99	A0A1E3Q8Y0	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.886
A0A1E3PW99	A0A1E3QAJ9	Uncharacterized protein.	Uncharacterized protein.	0.911
A0A1E3PW99	A0A1E3QBN3	Uncharacterized protein.	RRN7-type domain-containing protein.	0.963
A0A1E3PW99	A0A1E3QCK1	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase.	0.905
A0A1E3PWS3	A0A1E3PTU8	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	Uncharacterized protein.	0.609
A0A1E3PWS3	A0A1E3PW99	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	Uncharacterized protein.	0.609
A0A1E3PWS3	A0A1E3PZ45	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	Ubiquitin-like domain-containing protein.	0.655
A0A1E3PWS3	A0A1E3PZ58	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	Uncharacterized protein.	0.609
A0A1E3PWS3	A0A1E3QAJ9	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	Uncharacterized protein.	0.684
A0A1E3PWS3	A0A1E3QBM3	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	Uncharacterized protein.	0.582
A0A1E3PWS3	A0A1E3QCK1	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	Ubiquitin carboxyl-terminal hydrolase.	0.862
A0A1E3PZ45	A0A1E3PTU8	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.947