A0A1E3QE07 protein (Lipomyces starkeyi) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1E3QE07

Uncharacterized protein. (247 aa)

Predicted Functional Partners:

A0A1E3QBK3

0.643

A0A1E3QFF5

0.634

NOP7

0.621

A0A1E3QCP3

0.603

A0A1E3Q5X4

0.586

A0A1E3Q9J6

0.582

A0A1E3QGZ7

0.575

A0A1E3PXP0

0.554

ERB1

0.551

A0A1E3PUU0

0.534

Your Current Organism:

Lipomyces starkeyi

NCBI taxonomy Id: 675824
Other names: L. starkeyi NRRL Y-11557, Lipomyces starkeyi NRRL Y-11557

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1E3PUU0	A0A1E3Q5X4	A0A1E3PUU0	A0A1E3Q5X4	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein.	0.661
A0A1E3PUU0	A0A1E3QBK3	A0A1E3PUU0	A0A1E3QBK3	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein.	0.834
A0A1E3PUU0	A0A1E3QE07	A0A1E3PUU0	A0A1E3QE07	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein.	0.534
A0A1E3PUU0	A0A1E3QFF5	A0A1E3PUU0	A0A1E3QFF5	Ribosomal_L2_C domain-containing protein.	Ipi1_N domain-containing protein.	0.841
A0A1E3PUU0	A0A1E3QGZ7	A0A1E3PUU0	A0A1E3QGZ7	Ribosomal_L2_C domain-containing protein.	CP-type G domain-containing protein.	0.648
A0A1E3PUU0	ERB1	A0A1E3PUU0	A0A1E3PZR6	Ribosomal_L2_C domain-containing protein.	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.778
A0A1E3PUU0	NOP7	A0A1E3PUU0	A0A1E3QET8	Ribosomal_L2_C domain-containing protein.	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.953
A0A1E3PXP0	A0A1E3Q5X4	A0A1E3PXP0	A0A1E3Q5X4	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein.	0.603
A0A1E3PXP0	A0A1E3QBK3	A0A1E3PXP0	A0A1E3QBK3	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein.	0.597
A0A1E3PXP0	A0A1E3QE07	A0A1E3PXP0	A0A1E3QE07	Ribosomal_L2_C domain-containing protein.	Uncharacterized protein.	0.554
A0A1E3PXP0	A0A1E3QFF5	A0A1E3PXP0	A0A1E3QFF5	Ribosomal_L2_C domain-containing protein.	Ipi1_N domain-containing protein.	0.813
A0A1E3PXP0	A0A1E3QGZ7	A0A1E3PXP0	A0A1E3QGZ7	Ribosomal_L2_C domain-containing protein.	CP-type G domain-containing protein.	0.615
A0A1E3PXP0	ERB1	A0A1E3PXP0	A0A1E3PZR6	Ribosomal_L2_C domain-containing protein.	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.741
A0A1E3PXP0	NOP7	A0A1E3PXP0	A0A1E3QET8	Ribosomal_L2_C domain-containing protein.	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.863
A0A1E3Q5X4	A0A1E3PUU0	A0A1E3Q5X4	A0A1E3PUU0	Uncharacterized protein.	Ribosomal_L2_C domain-containing protein.	0.661
A0A1E3Q5X4	A0A1E3PXP0	A0A1E3Q5X4	A0A1E3PXP0	Uncharacterized protein.	Ribosomal_L2_C domain-containing protein.	0.603
A0A1E3Q5X4	A0A1E3Q9J6	A0A1E3Q5X4	A0A1E3Q9J6	Uncharacterized protein.	CLP1_P domain-containing protein.	0.999
A0A1E3Q5X4	A0A1E3QBK3	A0A1E3Q5X4	A0A1E3QBK3	Uncharacterized protein.	Uncharacterized protein.	0.921
A0A1E3Q5X4	A0A1E3QE07	A0A1E3Q5X4	A0A1E3QE07	Uncharacterized protein.	Uncharacterized protein.	0.586
A0A1E3Q5X4	A0A1E3QFF5	A0A1E3Q5X4	A0A1E3QFF5	Uncharacterized protein.	Ipi1_N domain-containing protein.	0.897