STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD47792.1Helix-turn-helix domain-containing protein. (118 aa)    
Predicted Functional Partners:
SDD47737.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
 
     0.887
SDD60929.1
Regulatory protein, arsR family.
  
     0.746
SDE22324.1
DNA-binding transcriptional regulator, ArsR family.
  
     0.725
SDD47681.1
Acetyltransferase (GNAT) family protein.
       0.556
SDD47839.1
Hypothetical protein.
       0.482
SDE22358.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
 
     0.440
Your Current Organism:
Auraticoccus monumenti
NCBI taxonomy Id: 675864
Other names: A. monumenti, Auraticoccus monumenti Alonso-Vega et al. 2011, CECT 7672, DSM 23257, LMG 25551, LMG:25551, Propionibacteriaceae bacterium MON 2.2, strain MON 2.2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.