STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD63596.1DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains. (232 aa)    
Predicted Functional Partners:
SDD63549.1
GAF domain-containing protein.
 0.977
SDD63734.1
Signal transduction histidine kinase.
  
  0.850
SDD05048.1
Signal transduction histidine kinase.
  
  0.841
SDE10542.1
Histidine kinase.
 
  0.830
SDE29700.1
Signal transduction histidine kinase.
  
  0.774
SDE21137.1
Signal transduction histidine kinase.
 
  0.772
SDD30633.1
Signal transduction histidine kinase.
  
  0.742
SDE33866.1
Histidine kinase.
 
  0.730
SDE36120.1
Signal transduction histidine kinase.
  
  0.726
SDD22298.1
Signal transduction histidine kinase.
  
  0.719
Your Current Organism:
Auraticoccus monumenti
NCBI taxonomy Id: 675864
Other names: A. monumenti, Auraticoccus monumenti Alonso-Vega et al. 2011, CECT 7672, DSM 23257, LMG 25551, LMG:25551, Propionibacteriaceae bacterium MON 2.2, strain MON 2.2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.