STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE66805.1N-acyl-D-amino-acid deacylase. (533 aa)    
Predicted Functional Partners:
SDE66846.1
D-serine deaminase, pyridoxal phosphate-dependent.
 
   
 0.971
SDD20584.1
Hexosaminidase; Manually curated.
  
  0.882
SDD84819.1
N-acetyl-beta-hexosaminidase.
 
  
  0.740
SDD34563.1
N-acetyl-beta-hexosaminidase.
  
  0.728
SDE66749.1
Reactive intermediate/imine deaminase.
 
     0.658
SDD13164.1
2-dehydro-3-deoxygluconokinase.
     0.524
SDE19253.1
Gluconolactonase.
     0.403
Your Current Organism:
Auraticoccus monumenti
NCBI taxonomy Id: 675864
Other names: A. monumenti, Auraticoccus monumenti Alonso-Vega et al. 2011, CECT 7672, DSM 23257, LMG 25551, LMG:25551, Propionibacteriaceae bacterium MON 2.2, strain MON 2.2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.