Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_001952955_00003 | GCA_001952955_00875 | GCA_001952955_00003 | GCA_001952955_00875 | Unannotated protein. | Unannotated protein. | 0.657 |
GCA_001952955_00003 | GCA_001952955_00876 | GCA_001952955_00003 | GCA_001952955_00876 | Unannotated protein. | Unannotated protein. | 0.895 |
GCA_001952955_00003 | GCA_001952955_00877 | GCA_001952955_00003 | GCA_001952955_00877 | Unannotated protein. | Unannotated protein. | 0.707 |
GCA_001952955_00003 | HolB | GCA_001952955_00003 | GCA_001952955_00861 | Unannotated protein. | Unannotated protein. | 0.558 |
GCA_001952955_00003 | dnaE | GCA_001952955_00003 | GCA_001952955_00597 | Unannotated protein. | Unannotated protein. | 0.558 |
GCA_001952955_00003 | dnaN | GCA_001952955_00003 | GCA_001952955_02815 | Unannotated protein. | Unannotated protein; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication [...] | 0.707 |
GCA_001952955_00003 | polB | GCA_001952955_00003 | GCA_001952955_01639 | Unannotated protein. | Unannotated protein. | 0.475 |
GCA_001952955_00003 | recA | GCA_001952955_00003 | GCA_001952955_02385 | Unannotated protein. | Unannotated protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.984 |
GCA_001952955_00875 | GCA_001952955_00003 | GCA_001952955_00875 | GCA_001952955_00003 | Unannotated protein. | Unannotated protein. | 0.657 |
GCA_001952955_00875 | GCA_001952955_00876 | GCA_001952955_00875 | GCA_001952955_00876 | Unannotated protein. | Unannotated protein. | 0.986 |
GCA_001952955_00875 | GCA_001952955_00877 | GCA_001952955_00875 | GCA_001952955_00877 | Unannotated protein. | Unannotated protein. | 0.975 |
GCA_001952955_00875 | HolB | GCA_001952955_00875 | GCA_001952955_00861 | Unannotated protein. | Unannotated protein. | 0.954 |
GCA_001952955_00875 | dnaN | GCA_001952955_00875 | GCA_001952955_02815 | Unannotated protein. | Unannotated protein; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of replication [...] | 0.946 |
GCA_001952955_00875 | lexA | GCA_001952955_00875 | GCA_001952955_02957 | Unannotated protein. | Unannotated protein; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.704 |
GCA_001952955_00875 | recA | GCA_001952955_00875 | GCA_001952955_02385 | Unannotated protein. | Unannotated protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.619 |
GCA_001952955_00876 | GCA_001952955_00003 | GCA_001952955_00876 | GCA_001952955_00003 | Unannotated protein. | Unannotated protein. | 0.895 |
GCA_001952955_00876 | GCA_001952955_00875 | GCA_001952955_00876 | GCA_001952955_00875 | Unannotated protein. | Unannotated protein. | 0.986 |
GCA_001952955_00876 | GCA_001952955_00877 | GCA_001952955_00876 | GCA_001952955_00877 | Unannotated protein. | Unannotated protein. | 0.994 |
GCA_001952955_00876 | HolB | GCA_001952955_00876 | GCA_001952955_00861 | Unannotated protein. | Unannotated protein. | 0.757 |
GCA_001952955_00876 | dnaE | GCA_001952955_00876 | GCA_001952955_00597 | Unannotated protein. | Unannotated protein. | 0.759 |
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