STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001952955_01819Unannotated protein. (129 aa)    
Predicted Functional Partners:
lpoB
Unannotated protein.
 
  
 0.962
VFL11327_00397
Unannotated protein.
  
  
 0.916
GCA_001952955_01820
Unannotated protein.
 
     0.909
VFL11327_00402
Unannotated protein; Belongs to the UPF0227 family.
 
   
 0.833
GCA_001952955_01817
Unannotated protein.
 
   
 0.788
GCA_001952955_02774
Unannotated protein.
  
     0.761
VFL11327_00298
Unannotated protein.
  
  
 0.690
GCA_001952955_00226
Unannotated protein.
  
     0.681
GCA_001952955_00539
Unannotated protein.
  
     0.677
GCA_001952955_02326
Unannotated protein.
  
     0.676
Your Current Organism:
Vibrio fluvialis
NCBI taxonomy Id: 676
Other names: ATCC 33809, CAIM 593, CCUG 13622, CCUG 20252, CIP 103355, DSM 19283, JCM 3752, LMG 7894, LMG:7894, NBRC 103150, NCCB 81034, NCTC 11327, V. fluvialis, strain VL 5125
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.