STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pepBUnannotated protein; Probably plays an important role in intracellular peptide degradation. (430 aa)    
Predicted Functional Partners:
pepN
Unannotated protein.
  
 0.930
gshB_1
Unannotated protein; Belongs to the prokaryotic GSH synthase family.
   
 
 0.930
pepD
Unannotated protein.
   
 
 0.923
pepA
Unannotated protein; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
  
  
 
0.921
Ggt
Unannotated protein.
     
 0.913
gshA
Unannotated protein; Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily.
     
 0.906
cysK_2
Unannotated protein.
   
 0.828
cysK_1
Unannotated protein; Belongs to the cysteine synthase/cystathionine beta- synthase family.
   
 0.828
tyrB
Unannotated protein.
    
 0.828
glyA
Unannotated protein; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
  
 
 0.818
Your Current Organism:
Vibrio fluvialis
NCBI taxonomy Id: 676
Other names: ATCC 33809, CAIM 593, CCUG 13622, CCUG 20252, CIP 103355, DSM 19283, JCM 3752, LMG 7894, LMG:7894, NBRC 103150, NCCB 81034, NCTC 11327, V. fluvialis, strain VL 5125
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.