Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_001952955_02236 | GCA_001952955_02238 | GCA_001952955_02236 | GCA_001952955_02238 | Unannotated protein. | Unannotated protein. | 0.997 |
GCA_001952955_02236 | GCA_001952955_03105 | GCA_001952955_02236 | GCA_001952955_03105 | Unannotated protein. | Unannotated protein. | 0.644 |
GCA_001952955_02236 | RecB | GCA_001952955_02236 | GCA_001952955_02237 | Unannotated protein. | Unannotated protein. | 0.999 |
GCA_001952955_02236 | recA | GCA_001952955_02236 | GCA_001952955_02385 | Unannotated protein. | Unannotated protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.638 |
GCA_001952955_02236 | rep | GCA_001952955_02236 | GCA_001952955_02759 | Unannotated protein. | Unannotated protein; Rep helicase is a single-stranded DNA-dependent ATPase involved in DNA replication; it can initiate unwinding at a nick in the DNA. It binds to the single-stranded DNA and acts in a progressive fashion along the DNA in the 3' to 5' direction. | 0.646 |
GCA_001952955_02236 | uvrD | GCA_001952955_02236 | GCA_001952955_02735 | Unannotated protein. | Unannotated protein. | 0.646 |
GCA_001952955_02238 | GCA_001952955_02236 | GCA_001952955_02238 | GCA_001952955_02236 | Unannotated protein. | Unannotated protein. | 0.997 |
GCA_001952955_02238 | RecB | GCA_001952955_02238 | GCA_001952955_02237 | Unannotated protein. | Unannotated protein. | 0.997 |
GCA_001952955_03105 | GCA_001952955_02236 | GCA_001952955_03105 | GCA_001952955_02236 | Unannotated protein. | Unannotated protein. | 0.644 |
GCA_001952955_03105 | GCA_001952955_04146 | GCA_001952955_03105 | GCA_001952955_04146 | Unannotated protein. | Unannotated protein. | 0.566 |
GCA_001952955_03105 | RecB | GCA_001952955_03105 | GCA_001952955_02237 | Unannotated protein. | Unannotated protein. | 0.748 |
GCA_001952955_03105 | ligA_1 | GCA_001952955_03105 | GCA_001952955_02008 | Unannotated protein. | Unannotated protein; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily. | 0.669 |
GCA_001952955_03105 | recA | GCA_001952955_03105 | GCA_001952955_02385 | Unannotated protein. | Unannotated protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.875 |
GCA_001952955_03105 | ruvA | GCA_001952955_03105 | GCA_001952955_01773 | Unannotated protein. | Unannotated protein; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.741 |
GCA_001952955_04146 | GCA_001952955_03105 | GCA_001952955_04146 | GCA_001952955_03105 | Unannotated protein. | Unannotated protein. | 0.566 |
GCA_001952955_04146 | RecB | GCA_001952955_04146 | GCA_001952955_02237 | Unannotated protein. | Unannotated protein. | 0.461 |
GCA_001952955_04146 | rep | GCA_001952955_04146 | GCA_001952955_02759 | Unannotated protein. | Unannotated protein; Rep helicase is a single-stranded DNA-dependent ATPase involved in DNA replication; it can initiate unwinding at a nick in the DNA. It binds to the single-stranded DNA and acts in a progressive fashion along the DNA in the 3' to 5' direction. | 0.508 |
GCA_001952955_04146 | uvrD | GCA_001952955_04146 | GCA_001952955_02735 | Unannotated protein. | Unannotated protein. | 0.575 |
RecB | GCA_001952955_02236 | GCA_001952955_02237 | GCA_001952955_02236 | Unannotated protein. | Unannotated protein. | 0.999 |
RecB | GCA_001952955_02238 | GCA_001952955_02237 | GCA_001952955_02238 | Unannotated protein. | Unannotated protein. | 0.997 |
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