Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_001952955_01806 | GCA_001952955_02384 | GCA_001952955_01806 | GCA_001952955_02384 | Unannotated protein. | Unannotated protein. | 0.492 |
GCA_001952955_01806 | GCA_001952955_02386 | GCA_001952955_01806 | GCA_001952955_02386 | Unannotated protein. | Unannotated protein. | 0.411 |
GCA_001952955_01806 | radA | GCA_001952955_01806 | GCA_001952955_02274 | Unannotated protein. | Unannotated protein; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.409 |
GCA_001952955_01806 | recA | GCA_001952955_01806 | GCA_001952955_02385 | Unannotated protein. | Unannotated protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.531 |
GCA_001952955_01806 | recG | GCA_001952955_01806 | GCA_001952955_00070 | Unannotated protein. | Unannotated protein; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. | 0.415 |
GCA_001952955_01806 | recN | GCA_001952955_01806 | GCA_001952955_02153 | Unannotated protein. | Unannotated protein; May be involved in recombinational repair of damaged DNA. | 0.405 |
GCA_001952955_01806 | ruvA | GCA_001952955_01806 | GCA_001952955_01773 | Unannotated protein. | Unannotated protein; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.519 |
GCA_001952955_01806 | ruvC | GCA_001952955_01806 | GCA_001952955_01774 | Unannotated protein. | Unannotated protein; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.411 |
GCA_001952955_02384 | GCA_001952955_01806 | GCA_001952955_02384 | GCA_001952955_01806 | Unannotated protein. | Unannotated protein. | 0.492 |
GCA_001952955_02384 | GCA_001952955_02386 | GCA_001952955_02384 | GCA_001952955_02386 | Unannotated protein. | Unannotated protein. | 0.570 |
GCA_001952955_02384 | alaS | GCA_001952955_02384 | GCA_001952955_02383 | Unannotated protein. | Unannotated protein; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.523 |
GCA_001952955_02384 | hflX | GCA_001952955_02384 | GCA_001952955_02580 | Unannotated protein. | Unannotated protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | 0.470 |
GCA_001952955_02384 | radA | GCA_001952955_02384 | GCA_001952955_02274 | Unannotated protein. | Unannotated protein; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.914 |
GCA_001952955_02384 | recA | GCA_001952955_02384 | GCA_001952955_02385 | Unannotated protein. | Unannotated protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.962 |
GCA_001952955_02384 | recG | GCA_001952955_02384 | GCA_001952955_00070 | Unannotated protein. | Unannotated protein; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. | 0.553 |
GCA_001952955_02384 | recN | GCA_001952955_02384 | GCA_001952955_02153 | Unannotated protein. | Unannotated protein; May be involved in recombinational repair of damaged DNA. | 0.618 |
GCA_001952955_02384 | ruvA | GCA_001952955_02384 | GCA_001952955_01773 | Unannotated protein. | Unannotated protein; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.554 |
GCA_001952955_02384 | ruvC | GCA_001952955_02384 | GCA_001952955_01774 | Unannotated protein. | Unannotated protein; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.740 |
GCA_001952955_02386 | GCA_001952955_01806 | GCA_001952955_02386 | GCA_001952955_01806 | Unannotated protein. | Unannotated protein. | 0.411 |
GCA_001952955_02386 | GCA_001952955_02384 | GCA_001952955_02386 | GCA_001952955_02384 | Unannotated protein. | Unannotated protein. | 0.570 |
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