Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_001952955_00706 | GCA_001952955_02414 | GCA_001952955_00706 | GCA_001952955_02414 | Unannotated protein. | Unannotated protein. | 0.687 |
GCA_001952955_00706 | der | GCA_001952955_00706 | GCA_001952955_02177 | Unannotated protein. | Unannotated protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.471 |
GCA_001952955_02236 | GCA_001952955_02414 | GCA_001952955_02236 | GCA_001952955_02414 | Unannotated protein. | Unannotated protein. | 0.772 |
GCA_001952955_02236 | dnaB | GCA_001952955_02236 | GCA_001952955_02558 | Unannotated protein. | Unannotated protein; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | 0.808 |
GCA_001952955_02236 | recQ_2 | GCA_001952955_02236 | GCA_001952955_02730 | Unannotated protein. | Unannotated protein. | 0.842 |
GCA_001952955_02414 | GCA_001952955_00706 | GCA_001952955_02414 | GCA_001952955_00706 | Unannotated protein. | Unannotated protein. | 0.687 |
GCA_001952955_02414 | GCA_001952955_02236 | GCA_001952955_02414 | GCA_001952955_02236 | Unannotated protein. | Unannotated protein. | 0.772 |
GCA_001952955_02414 | GCA_001952955_02415 | GCA_001952955_02414 | GCA_001952955_02415 | Unannotated protein. | Unannotated protein. | 0.869 |
GCA_001952955_02414 | GCA_001952955_02416 | GCA_001952955_02414 | GCA_001952955_02416 | Unannotated protein. | Unannotated protein. | 0.714 |
GCA_001952955_02414 | der | GCA_001952955_02414 | GCA_001952955_02177 | Unannotated protein. | Unannotated protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.847 |
GCA_001952955_02414 | dnaB | GCA_001952955_02414 | GCA_001952955_02558 | Unannotated protein. | Unannotated protein; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | 0.955 |
GCA_001952955_02414 | priB | GCA_001952955_02414 | GCA_001952955_02562 | Unannotated protein. | Unannotated protein; Binds single-stranded DNA at the primosome assembly site (PAS); Belongs to the PriB family. | 0.773 |
GCA_001952955_02414 | recQ_2 | GCA_001952955_02414 | GCA_001952955_02730 | Unannotated protein. | Unannotated protein. | 0.762 |
GCA_001952955_02414 | rph | GCA_001952955_02414 | GCA_001952955_02720 | Unannotated protein. | Unannotated protein; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.940 |
GCA_001952955_02414 | rpoD | GCA_001952955_02414 | GCA_001952955_02405 | Unannotated protein. | Unannotated protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.698 |
GCA_001952955_02415 | GCA_001952955_02414 | GCA_001952955_02415 | GCA_001952955_02414 | Unannotated protein. | Unannotated protein. | 0.869 |
GCA_001952955_02415 | GCA_001952955_02416 | GCA_001952955_02415 | GCA_001952955_02416 | Unannotated protein. | Unannotated protein. | 0.773 |
GCA_001952955_02415 | dnaB | GCA_001952955_02415 | GCA_001952955_02558 | Unannotated protein. | Unannotated protein; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. | 0.539 |
GCA_001952955_02416 | GCA_001952955_02414 | GCA_001952955_02416 | GCA_001952955_02414 | Unannotated protein. | Unannotated protein. | 0.714 |
GCA_001952955_02416 | GCA_001952955_02415 | GCA_001952955_02416 | GCA_001952955_02415 | Unannotated protein. | Unannotated protein. | 0.773 |
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