Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_001952955_00613 | GCA_001952955_03166 | GCA_001952955_00613 | GCA_001952955_03166 | Unannotated protein. | Unannotated protein. | 0.973 |
GCA_001952955_00613 | folD | GCA_001952955_00613 | GCA_001952955_01879 | Unannotated protein. | Unannotated protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. | 0.972 |
GCA_001952955_00613 | glyA | GCA_001952955_00613 | GCA_001952955_02035 | Unannotated protein. | Unannotated protein; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.969 |
GCA_001952955_00613 | glyA2 | GCA_001952955_00613 | GCA_001952955_04506 | Unannotated protein. | Unannotated protein; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.969 |
GCA_001952955_00613 | guaB | GCA_001952955_00613 | GCA_001952955_02173 | Unannotated protein. | Unannotated protein; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family. | 0.603 |
GCA_001952955_00613 | purB | GCA_001952955_00613 | GCA_001952955_01127 | Unannotated protein. | Unannotated protein; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily. | 0.929 |
GCA_001952955_00613 | purD | GCA_001952955_00613 | GCA_001952955_02659 | Unannotated protein. | Unannotated protein; Belongs to the GARS family. | 0.999 |
GCA_001952955_00613 | purH | GCA_001952955_00613 | GCA_001952955_02658 | Unannotated protein. | Unannotated protein. | 0.999 |
GCA_001952955_00613 | purL | GCA_001952955_00613 | GCA_001952955_02135 | Unannotated protein. | Unannotated protein; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. | 0.999 |
GCA_001952955_00613 | purT | GCA_001952955_00613 | GCA_001952955_01620 | Unannotated protein. | Unannotated protein; Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate; Belongs to the PurK/PurT family. | 0.974 |
GCA_001952955_03166 | GCA_001952955_00613 | GCA_001952955_03166 | GCA_001952955_00613 | Unannotated protein. | Unannotated protein. | 0.973 |
GCA_001952955_03166 | folD | GCA_001952955_03166 | GCA_001952955_01879 | Unannotated protein. | Unannotated protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. | 0.994 |
GCA_001952955_03166 | glyA | GCA_001952955_03166 | GCA_001952955_02035 | Unannotated protein. | Unannotated protein; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.969 |
GCA_001952955_03166 | glyA2 | GCA_001952955_03166 | GCA_001952955_04506 | Unannotated protein. | Unannotated protein; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.969 |
GCA_001952955_03166 | purB | GCA_001952955_03166 | GCA_001952955_01127 | Unannotated protein. | Unannotated protein; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily. | 0.603 |
GCA_001952955_03166 | purD | GCA_001952955_03166 | GCA_001952955_02659 | Unannotated protein. | Unannotated protein; Belongs to the GARS family. | 0.731 |
GCA_001952955_03166 | purH | GCA_001952955_03166 | GCA_001952955_02658 | Unannotated protein. | Unannotated protein. | 0.990 |
GCA_001952955_03166 | purL | GCA_001952955_03166 | GCA_001952955_02135 | Unannotated protein. | Unannotated protein; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. | 0.928 |
GCA_001952955_03166 | purT | GCA_001952955_03166 | GCA_001952955_01620 | Unannotated protein. | Unannotated protein; Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate; Belongs to the PurK/PurT family. | 0.900 |
folD | GCA_001952955_00613 | GCA_001952955_01879 | GCA_001952955_00613 | Unannotated protein; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate. | Unannotated protein. | 0.972 |
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