STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001952955_02669Unannotated protein. (316 aa)    
Predicted Functional Partners:
GCA_001952955_02668
Unannotated protein.
  
 0.975
GCA_001952955_02682
Unannotated protein.
  
 
 0.942
GCA_001952955_02670
Unannotated protein.
 
  
 0.928
GCA_001952955_02090
Unannotated protein.
  
  
 0.918
GCA_001952955_03061
Unannotated protein.
  
  
 0.918
rpsL
Unannotated protein; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
   
 0.908
GCA_001952955_03058
Unannotated protein.
 
  
 0.897
rpsN
Unannotated protein; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
   
  0.888
rpsQ
Unannotated protein; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
 0.878
rpsJ
Unannotated protein; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
  
 0.874
Your Current Organism:
Vibrio fluvialis
NCBI taxonomy Id: 676
Other names: ATCC 33809, CAIM 593, CCUG 13622, CCUG 20252, CIP 103355, DSM 19283, JCM 3752, LMG 7894, LMG:7894, NBRC 103150, NCCB 81034, NCTC 11327, V. fluvialis, strain VL 5125
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.