STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_001952955_03745Unannotated protein. (328 aa)    
Predicted Functional Partners:
GCA_001952955_03742
Unannotated protein.
 
  
 0.948
GCA_001952955_00277
Unannotated protein.
  
  
 
0.922
pucG
Unannotated protein.
  
 
 0.915
aceB
Unannotated protein; Belongs to the malate synthase family.
  
 
 0.912
aceA
Unannotated protein.
     
 0.909
gloA_1
Unannotated protein.
   
 0.906
eda_3
Unannotated protein.
    
  0.904
gph_2
Unannotated protein; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family.
    
  0.904
eda_1
Unannotated protein.
    
  0.904
IdnK
Unannotated protein.
    
 0.901
Your Current Organism:
Vibrio fluvialis
NCBI taxonomy Id: 676
Other names: ATCC 33809, CAIM 593, CCUG 13622, CCUG 20252, CIP 103355, DSM 19283, JCM 3752, LMG 7894, LMG:7894, NBRC 103150, NCCB 81034, NCTC 11327, V. fluvialis, strain VL 5125
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.