STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEB27972.1Glycosyl transferase, group 1. (314 aa)    
Predicted Functional Partners:
AEB28230.1
Mannose-6-phosphate isomerase.
 
  
 0.741
glgB
1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
 
 0.679
AEE26793.1
NAD-dependent epimerase/dehydratase.
  
  
 0.677
AEE26594.1
Sugar transferase involved in lipopolysaccharide synthesis.
 
  
 0.508
AEE26591.1
Putative polysaccharide biosynthesis protein.
 
  
 0.504
AEE26584.1
Glycosyl transferase, group 1.
 
    0.493
aspS
Aspartyl-tRNA synthetase/Aspartyl-tRNA(Asn) synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
       0.488
AEE26229.1
Hypothetical protein.
  
  
 0.472
Your Current Organism:
Francisella tularensis novicida
NCBI taxonomy Id: 676032
Other names: F. cf. tularensis subsp. novicida 3523, Francisella cf. novicida 3523, Francisella cf. tularensis subsp. novicida 3523, Francisella sp. 3523
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.