STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000975135_01811Unannotated protein. (161 aa)    
Predicted Functional Partners:
GCA_000975135_01668
Unannotated protein.
  
 
 0.987
GCA_000975135_01667
Unannotated protein.
   
 
 0.967
GCA_000975135_01703
Unannotated protein.
  
 
 0.946
GCA_000975135_00095
Unannotated protein.
 
 
 
 0.945
GCA_000975135_01662
Unannotated protein.
  
  
 0.768
GCA_000975135_01812
Unannotated protein.
       0.695
GCA_000975135_01797
Unannotated protein.
      
 0.677
GCA_000975135_01764
Unannotated protein.
     
 0.564
GCA_000975135_02208
Unannotated protein.
   
    0.546
GCA_000975135_02270
Unannotated protein.
    
 
 0.528
Your Current Organism:
Demequina aurantiaca
NCBI taxonomy Id: 676200
Other names: D. aurantiaca, Demequina aurantiaca Ue et al. 2011, KCTC 19745, MBIC 08347, NBRC 106265, marine actinobacterium YM12-102, strain YM12-102
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.