STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000975155_01249Unannotated protein. (245 aa)    
Predicted Functional Partners:
GCA_000975155_01254
Unannotated protein.
   
   0.879
GCA_000975155_01250
Unannotated protein.
       0.773
GCA_000975155_02066
Unannotated protein.
  
 
 0.701
GCA_000975155_00294
Unannotated protein.
    
 0.643
GCA_000975155_01252
Unannotated protein.
    
 0.643
GCA_000975155_01327
Unannotated protein.
    
  0.531
GCA_000975155_01248
Unannotated protein.
 
     0.497
GCA_000975155_02247
Unannotated protein.
    
 
 0.463
GCA_000975155_02228
Unannotated protein.
     
 0.405
Your Current Organism:
Demequina globuliformis
NCBI taxonomy Id: 676202
Other names: D. globuliformis, Demequina globuliformis Ue et al. 2011, KCTC 19747, MBIC 08349, NBRC 106266, marine actinobacterium YM24-125, strain YM24-125
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.