STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000975155_01800Unannotated protein. (690 aa)    
Predicted Functional Partners:
GCA_000975155_01616
Unannotated protein.
  
  
 0.893
GCA_000975155_01801
Unannotated protein.
 
     0.885
GCA_000975155_01799
Unannotated protein.
       0.844
GCA_000975155_01207
Unannotated protein.
  
     0.733
GCA_000975155_01802
Unannotated protein.
 
     0.703
GCA_000975155_01193
Unannotated protein.
  
     0.674
GCA_000975155_02395
Unannotated protein.
  
     0.668
GCA_000975155_01276
Unannotated protein.
  
     0.650
GCA_000975155_01798
Unannotated protein.
       0.640
GCA_000975155_02317
Unannotated protein.
  
     0.637
Your Current Organism:
Demequina globuliformis
NCBI taxonomy Id: 676202
Other names: D. globuliformis, Demequina globuliformis Ue et al. 2011, KCTC 19747, MBIC 08349, NBRC 106266, marine actinobacterium YM24-125, strain YM24-125
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.