Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KRG48016.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (157 aa)    
Predicted Functional Partners:
KRG38298.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.765
KRG46398.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.549
KRG46726.1
Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.454
KRG38756.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.441
KRG41395.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.434
KRG44058.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.432
dnaX
DNA polymerase III subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
       0.407
KRG48018.1
Nucleoid-associated protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.
       0.407
Your Current Organism:
Stenotrophomonas panacihumi
NCBI taxonomy Id: 676599
Other names: JCM 16536, KCTC 22893, KEMB 9004-002, KEMB:9004-002, S. panacihumi, Stenotrophomonas sp. MK06, strain MK06
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