STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RF55_15061Rab gtpase-activating protein 1. (233 aa)    
Predicted Functional Partners:
RF55_1017
Rab5 gdp gtp exchange factor.
   
  0.942
RF55_5013
Rab gtpase-activating protein 1.
 
     0.763
RF55_6183
Ras-related protein rab-43.
    
 0.625
RF55_4980
Gtp-binding protein parf.
    
 0.625
RF55_943
Amphiphysin-like isoform 1 protein.
    
 
 0.589
RF55_17624
Adp-ribosylation factor-binding protein gga1.
    
  0.580
RF55_5651
Ras-related protein.
    
 0.580
RF55_4619
Ras-related protein rab-5c-like protein.
    
 0.580
RF55_2991
Ras-related protein rab-24.
    
 0.580
RF55_5135
Rab gtpase-binding effector protein 1-like protein.
     
 0.531
Your Current Organism:
Lasius niger
NCBI taxonomy Id: 67767
Other names: L. niger, Lasius (Lasius) niger
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.