STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RF55_14938Coiled-coil and c2 domain-containing protein 1-like protein. (359 aa)    
Predicted Functional Partners:
RF55_5084
Charged multivesicular body protein 4b-like protein.
    
 0.971
RF55_7959
Charged multivesicular body protein 3.
     
 0.850
RF55_19342
Ist1-like protein.
     
 0.844
RF55_8632
Charged multivesicular body protein 6-like protein.
     
 0.843
RF55_9365
Vacuolar protein sorting-associated protein 4b-like protein; Belongs to the AAA ATPase family.
     
 0.794
RF55_2203
Charged multivesicular body protein 7-like protein.
     
 0.777
RF55_26318
Putative class e vacuolar-protein sorting and endocytosis factor.
     
 0.693
RF55_5099
Charged multivesicular body protein 2a.
     
 0.693
RF55_3125
Magnesium-dependent phosphatase 1-like protein.
    
 0.599
RF55_7978
Fidgetin-like protein 1-like protein; Belongs to the AAA ATPase family.
     
 0.590
Your Current Organism:
Lasius niger
NCBI taxonomy Id: 67767
Other names: L. niger, Lasius (Lasius) niger
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