STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RF55_13627Retinoic acid receptor rxr-alpha-a. (115 aa)    
Predicted Functional Partners:
RF55_8471
Ecdysone receptor-like isoform 1 protein.
   
 0.988
RF55_6902
Ecdysone receptor.
   
 0.961
RF55_4415
Mediator of rna polymerase ii transcription subunit 1.
    
 0.947
RF55_13677
Nuclear receptor coactivator.
   
 0.946
RF55_8413
Nuclear receptor coactivator 3-like isoform x9 protein.
   
 0.946
RF55_8146
Creb-binding protein.
    
 0.881
RF55_2596
Nuclear hormone receptor hr96.
   
 0.874
RF55_5594
Mediator of RNA polymerase II transcription subunit 13; Component of the Mediator complex, a coactivator involved in regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
  
 
  0.849
RF55_3078
Nuclear hormone receptor hr38.
    
 0.842
RF55_2582
Nuclear hormone receptor hr38.
    
 0.842
Your Current Organism:
Lasius niger
NCBI taxonomy Id: 67767
Other names: L. niger, Lasius (Lasius) niger
Server load: medium (56%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.