STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RF55_13223S00954 pol polyprotein. (181 aa)    
Predicted Functional Partners:
RF55_10657
Fanconi anemia group m protein.
    
  0.664
RF55_13505
Integrase core domain protein.
  
 
   0.510
RF55_23296
Retrovirus-related pol polyprotein from transposon tnt 1-94.
  
     0.501
RF55_24712
Retroelement pol polyprotein.
  
     0.468
RF55_17787
Retrovirus-related pol polyprotein from transposon tnt 1-94.
  
     0.443
RF55_4453
Retrovirus-related pol polyprotein from transposon tnt 1-94.
  
     0.442
RF55_12496
Retrovirus-related gag-pol polyprotein.
  
     0.439
RF55_14339
Lectin receptor kinase.
  
     0.435
RF55_15557
Retrovirus-related pol polyprotein from transposon tnt 1-94.
  
     0.432
RF55_17671
Integrase core domain protein.
  
     0.431
Your Current Organism:
Lasius niger
NCBI taxonomy Id: 67767
Other names: L. niger, Lasius (Lasius) niger
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.