STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RF55_13027Putative atp-dependent rna helicase ddx23; Belongs to the DEAD box helicase family. (763 aa)    
Predicted Functional Partners:
RF55_6962
Pre-mrna-processing-splicing factor 8-like protein.
   
 0.997
RF55_13329
Pre-mrna-processing factor 6-like protein.
   
 0.996
RF55_6627
Putative u5 small nuclear ribonucleoprotein component.
   
 0.996
RF55_19472
Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.
    
 0.995
RF55_11013
U5 small nuclear ribonucleoprotein 40 kDa.
    
 0.994
RF55_22898
Uncharacterized protein.
    
 0.990
RF55_5516
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
    
 0.988
RF55_2369
Small nuclear ribonucleoprotein Sm D3.
   
 0.988
RF55_21422
Small nuclear ribonucleoprotein f-like protein; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
 0.984
RF55_5923
U4 tri-snrnp-associated protein 1.
   
 0.983
Your Current Organism:
Lasius niger
NCBI taxonomy Id: 67767
Other names: L. niger, Lasius (Lasius) niger
Server load: medium (58%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.