STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RF55_11997Integrase_H2C2 domain-containing protein. (118 aa)    
Predicted Functional Partners:
RF55_4734
Leucine-rich repeat serine threonine-protein kinase 1-like protein.
    
 0.678
RF55_7338
Putative atp-dependent rna helicase dhx34.
    
  0.533
RF55_3197
Brca1-associated ring domain protein 1-like protein.
    
  0.526
RF55_2329
General transcription factor 3c polypeptide 3-like protein.
    
 0.524
RF55_3524
Suppressor of fused-like protein.
    
  0.516
RF55_7390
RuvB-like helicase; Proposed core component of the chromatin remodeling Ino80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair.
    
  0.515
RF55_572
Protein roadkill-like protein.
   
  0.512
RF55_13133
Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize; Belongs to the actin family. ARP8 subfamily.
    
  0.509
RF55_2049
RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.502
RF55_8146
Creb-binding protein.
    
  0.497
Your Current Organism:
Lasius niger
NCBI taxonomy Id: 67767
Other names: L. niger, Lasius (Lasius) niger
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.