STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RF55_11268Transcription factor capicua. (221 aa)    
Predicted Functional Partners:
RF55_1159
Lim domain kinase 1.
    
 0.549
RF55_2747
Paired amphipathic helix protein sin3a.
   
 
 0.533
RF55_7405
Paired amphipathic helix protein sin3a.
   
 
 0.533
RF55_14427
Putative serine threonine-protein kinase pelle; Belongs to the protein kinase superfamily.
    
 0.519
RF55_9783
Protein tube.
    
 0.519
RF55_11269
Transcription factor capicua.
 
      0.443
Your Current Organism:
Lasius niger
NCBI taxonomy Id: 67767
Other names: L. niger, Lasius (Lasius) niger
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.