RF55_10212 protein (Lasius niger) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RF55_10212

Uncharacterized protein. (234 aa)

Predicted Functional Partners:

RF55_7404

0.429

RF55_6924

0.429

RF55_6235

0.429

RF55_5535

0.429

RF55_3983

0.429

RF55_14173

0.429

RF55_9064

0.429

RF55_7935

0.429

RF55_2211

0.429

Your Current Organism:

Lasius niger

NCBI taxonomy Id: 67767
Other names: L. niger, Lasius (Lasius) niger

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RF55_10212	RF55_14173	A0A0J7KIP5	A0A0J7N284	Uncharacterized protein.	Growth differentiation factor 11-like protein.	0.429
RF55_10212	RF55_2211	A0A0J7KIP5	A0A0J7NYH2	Uncharacterized protein.	Bone morphogenetic protein 10.	0.429
RF55_10212	RF55_3983	A0A0J7KIP5	A0A0J7KZN8	Uncharacterized protein.	Protein decapentaplegic.	0.429
RF55_10212	RF55_5535	A0A0J7KIP5	A0A0J7KVN2	Uncharacterized protein.	Bone morphogenetic protein 3.	0.429
RF55_10212	RF55_6235	A0A0J7KIP5	A0A0J7KTK5	Uncharacterized protein.	Bone morphogenetic protein 7.	0.429
RF55_10212	RF55_6924	A0A0J7KIP5	A0A0J7KRT5	Uncharacterized protein.	Protein 60a.	0.429
RF55_10212	RF55_7404	A0A0J7KIP5	A0A0J7KQN4	Uncharacterized protein.	Protein 60a.	0.429
RF55_10212	RF55_7935	A0A0J7KIP5	A0A0J7NI05	Uncharacterized protein.	Inhibin beta chain.	0.429
RF55_10212	RF55_9064	A0A0J7KIP5	A0A0J7NF23	Uncharacterized protein.	Growth differentiation factor 8-like protein.	0.429
RF55_14173	RF55_10212	A0A0J7N284	A0A0J7KIP5	Growth differentiation factor 11-like protein.	Uncharacterized protein.	0.429
RF55_14173	RF55_7935	A0A0J7N284	A0A0J7NI05	Growth differentiation factor 11-like protein.	Inhibin beta chain.	0.600
RF55_2211	RF55_10212	A0A0J7NYH2	A0A0J7KIP5	Bone morphogenetic protein 10.	Uncharacterized protein.	0.429
RF55_2211	RF55_3983	A0A0J7NYH2	A0A0J7KZN8	Bone morphogenetic protein 10.	Protein decapentaplegic.	0.564
RF55_2211	RF55_6924	A0A0J7NYH2	A0A0J7KRT5	Bone morphogenetic protein 10.	Protein 60a.	0.511
RF55_2211	RF55_7404	A0A0J7NYH2	A0A0J7KQN4	Bone morphogenetic protein 10.	Protein 60a.	0.537
RF55_3983	RF55_10212	A0A0J7KZN8	A0A0J7KIP5	Protein decapentaplegic.	Uncharacterized protein.	0.429
RF55_3983	RF55_2211	A0A0J7KZN8	A0A0J7NYH2	Protein decapentaplegic.	Bone morphogenetic protein 10.	0.564
RF55_3983	RF55_5535	A0A0J7KZN8	A0A0J7KVN2	Protein decapentaplegic.	Bone morphogenetic protein 3.	0.830
RF55_3983	RF55_6924	A0A0J7KZN8	A0A0J7KRT5	Protein decapentaplegic.	Protein 60a.	0.914
RF55_3983	RF55_7404	A0A0J7KZN8	A0A0J7KQN4	Protein decapentaplegic.	Protein 60a.	0.915