STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RF55_6285Nuclear valosin-containing. (1933 aa)    
Predicted Functional Partners:
RF55_12300
Ubx domain-containing protein 7-like protein.
   
 0.982
RF55_14382
Superkiller viralicidic activity 2-like 2 protein.
   
 
 0.922
RF55_469
Nsfl1 cofactor p47.
   
 0.899
RF55_6878
Ubx domain-containing protein 1-a-like protein.
    
 0.886
RF55_3183
Putative atp-dependent rna helicase ddx56-like protein.
   
   0.845
RF55_17104
Nucleolar mif4g domain-containing protein 1.
   
    0.831
RF55_12252
Nuclear protein localization protein 4-like protein.
    
 0.825
RF55_2756
Nuclear protein localization protein 4-like protein.
    
 0.825
RF55_11038
Ubiquitin fusion degradation protein 1-like protein.
    
 0.803
RF55_11787
Soluble nsf attachment protein.
    
 0.802
Your Current Organism:
Lasius niger
NCBI taxonomy Id: 67767
Other names: L. niger, Lasius (Lasius) niger
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