STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RF55_5918tRNA (guanine(26)-N(2))-dimethyltransferase. (529 aa)    
Predicted Functional Partners:
RF55_4509
Transducin beta-like protein 3-like protein.
   
    0.841
RF55_7749
Ribosome production factor 2-like protein.
   
  
 0.795
RF55_4048
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.
   
 
 0.768
RF55_4032
Trna cytosine-c-methyltransferase-like protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
   
 
 0.766
RF55_731
Cirhin-like protein.
   
    0.766
RF55_12891
Wd repeat-containing protein 46.
   
    0.748
RF55_5492
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
    0.746
RF55_5917
Aldose reductase.
 
   
  0.742
RF55_2029
Nucleolar complex protein 2-like protein.
   
    0.741
RF55_5636
Trna pseudouridine synthase b.
   
 
 0.726
Your Current Organism:
Lasius niger
NCBI taxonomy Id: 67767
Other names: L. niger, Lasius (Lasius) niger
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.