STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RF55_4894Neutral ceramidase. (373 aa)    
Predicted Functional Partners:
RF55_5049
Neutral ceramidase.
 
     0.952
RF55_2462
Ceramide kinase.
    
 0.903
RF55_13523
Sphingosine kinase 2-like isoform 1 protein.
    
 0.897
RF55_8081
Neutral sphingomyelinase.
     
 0.891
RF55_18575
Lag1 longevity assurance-like protein 6 protein.
     
 0.891
RF55_1064
3-ketodihydrosphingosine reductase-like protein.
     
 0.881
RF55_3359
Phosphatidylcholine:ceramide cholinephosphotransferase 1-like protein.
 
   
 0.870
RF55_5591
Ceramide glucosyltransferase.
     
 0.864
RF55_3455
Sphingolipid delta-desaturase des1; Belongs to the fatty acid desaturase type 1 family. DEGS subfamily.
     
 0.863
RF55_6410
Sphingomyelin phosphodiesterase.
     
 0.846
Your Current Organism:
Lasius niger
NCBI taxonomy Id: 67767
Other names: L. niger, Lasius (Lasius) niger
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.