STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RF55_4265Chondroitin sulfate proteoglycan 4. (2135 aa)    
Predicted Functional Partners:
RF55_3592
Chondroitin sulfate proteoglycan 4.
 
     0.780
RF55_13322
Sodium calcium exchanger 3; Belongs to the Ca(2+):cation antiporter (CaCA) (TC 2.A.19) family.
   
 0.565
RF55_25246
Sodium calcium exchanger 3.
   
 0.565
RF55_7140
Glypican-like protein; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family.
   
 
  0.527
RF55_8590
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
     
 0.523
RF55_396
Protein eyes shut.
    
  0.516
RF55_12068
Carbohydrate sulfotransferase 5.
     
 0.503
RF55_9645
Integrin beta; Belongs to the integrin beta chain family.
    
  0.498
RF55_8214
Integrin beta-ps.
    
  0.498
RF55_2651
Integrin beta; Belongs to the integrin beta chain family.
    
  0.498
Your Current Organism:
Lasius niger
NCBI taxonomy Id: 67767
Other names: L. niger, Lasius (Lasius) niger
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.